STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK97634.1Hypothetical protein. (318 aa)    
Predicted Functional Partners:
KRK97633.1
Transcription activator effector-binding protein.
 
     0.897
dinG
Rad3-related DNA helicase; 3'-5' exonuclease.
    
  0.732
KRK97798.1
Cell surface protein precursor.
  
     0.707
KRK98607.1
Hypothetical protein.
  
     0.688
KRK97653.1
Hypothetical protein.
  
     0.683
KRK98700.1
Hypothetical protein.
  
     0.628
KRK97057.1
ABC-2 domain containing protein.
  
     0.569
KRK98601.1
Fibronectin-binding protein.
  
     0.556
KRK99848.1
Hypothetical protein.
  
     0.540
KRK98600.1
Adhesion exoprotein.
  
     0.537
Your Current Organism:
Lactobacillus odoratitofui
NCBI taxonomy Id: 1423776
Other names: L. odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui DSM 19909, Lactobacillus odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui JCM 15043, Lactobacillus odoratitofui JCM 15043 = DSM 19909, Lactobacillus sp. YIT 11304
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