KRL05651.1 protein (Lactobacillus oeni) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

KRL05651.1

Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily. (347 aa)

Predicted Functional Partners:

KRL05652.1

0.999

KRL05653.1

0.998

KRL04554.1

0.998

KRL04555.1

0.991

KRL05650.1

0.979

KRL05654.1

0.945

KRL05347.1

0.938

ftsE

0.899

KRL05948.1

0.898

phnC

0.896

Your Current Organism:

Lactobacillus oeni

NCBI taxonomy Id: 1423777
Other names: L. oeni DSM 19972, Lactobacillus oeni DSM 19972

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRL04554.1	KRL04555.1	FD46_GL001685	FD46_GL001686	Oligopeptide ABC transporter.	Oligopeptide ABC transporter.	0.997
KRL04554.1	KRL05347.1	FD46_GL001685	FD46_GL000745	Oligopeptide ABC transporter.	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	0.836
KRL04554.1	KRL05650.1	FD46_GL001685	FD46_GL000395	Oligopeptide ABC transporter.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
KRL04554.1	KRL05651.1	FD46_GL001685	FD46_GL000396	Oligopeptide ABC transporter.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
KRL04554.1	KRL05653.1	FD46_GL001685	FD46_GL000398	Oligopeptide ABC transporter.	Oligopeptide transport system permease protein.	0.995
KRL04554.1	KRL05654.1	FD46_GL001685	FD46_GL000399	Oligopeptide ABC transporter.	Oligopeptide-binding protein.	0.638
KRL04554.1	KRL05948.1	FD46_GL001685	FD46_GL000713	Oligopeptide ABC transporter.	Oligopeptide-binding protein.	0.638
KRL04555.1	KRL04554.1	FD46_GL001686	FD46_GL001685	Oligopeptide ABC transporter.	Oligopeptide ABC transporter.	0.997
KRL04555.1	KRL05347.1	FD46_GL001686	FD46_GL000745	Oligopeptide ABC transporter.	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	0.855
KRL04555.1	KRL05650.1	FD46_GL001686	FD46_GL000395	Oligopeptide ABC transporter.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.989
KRL04555.1	KRL05651.1	FD46_GL001686	FD46_GL000396	Oligopeptide ABC transporter.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.991
KRL04555.1	KRL05652.1	FD46_GL001686	FD46_GL000397	Oligopeptide ABC transporter.	Peptide nickel transport system permease protein.	0.987
KRL04555.1	KRL05654.1	FD46_GL001686	FD46_GL000399	Oligopeptide ABC transporter.	Oligopeptide-binding protein.	0.683
KRL04555.1	KRL05948.1	FD46_GL001686	FD46_GL000713	Oligopeptide ABC transporter.	Oligopeptide-binding protein.	0.687
KRL05347.1	KRL04554.1	FD46_GL000745	FD46_GL001685	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Oligopeptide ABC transporter.	0.836
KRL05347.1	KRL04555.1	FD46_GL000745	FD46_GL001686	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Oligopeptide ABC transporter.	0.855
KRL05347.1	KRL05650.1	FD46_GL000745	FD46_GL000395	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.966
KRL05347.1	KRL05651.1	FD46_GL000745	FD46_GL000396	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.938
KRL05347.1	KRL05652.1	FD46_GL000745	FD46_GL000397	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Peptide nickel transport system permease protein.	0.961
KRL05347.1	KRL05653.1	FD46_GL000745	FD46_GL000398	Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.	Oligopeptide transport system permease protein.	0.963

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

49

average node degree:

8.91

avg. local clustering coefficient:

0.915

expected number of edges:

32

PPI enrichment p-value:

0.00331

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006281

DNA repair

7 of 68

1.75

3.08

7.38e-09

GO:0006259

DNA metabolic process

9 of 215

1.36

2.1

7.38e-09

GO:0009432

SOS response

3 of 15

2.04

1.81

0.00025

GO:0006310

DNA recombination

4 of 71

1.49

1.39

0.00042

GO:0019363

Pyridine nucleotide biosynthetic process

2 of 8

2.14

1.17

0.0062

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003684

Damaged DNA binding

3 of 9

2.26

1.9

0.00024

GO:0140097

Catalytic activity, acting on DNA

6 of 104

1.5

1.84

9.90e-06

GO:0140640

Catalytic activity, acting on a nucleic acid

7 of 239

1.2

1.34

1.78e-05

GO:0140664

ATP-dependent DNA damage sensor activity

2 of 6

2.26

1.26

0.0045

GO:0008094

ATP-dependent activity, acting on DNA

3 of 32

1.71

1.24

0.0026

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1632

DNA repair, and DNA damage sensor activity

8 of 29

2.18

5.57

1.79e-13

CL:1634

Mixed, incl. DNA damage sensor activity, and RecQ zinc-binding

3 of 16

2.01

1.41

0.0018

CL:1652

Mixed, incl. RecQ zinc-binding, and UvrD/REP helicase N-terminal domain

2 of 7

2.19

0.8

0.0332

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03440

Homologous recombination

4 of 40

1.74

1.8

9.99e-05

map03420

Nucleotide excision repair

3 of 26

1.8

1.45

0.0010

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0234

DNA repair

6 of 26

2.1

4.03

1.32e-09

KW-0742

SOS response

3 of 6

2.44

2.42

2.68e-05

KW-0235

DNA replication

2 of 13

1.92

1.01

0.0111

KW-0238

DNA-binding

5 of 199

1.14

0.99

0.00088

KW-0378

Hydrolase

5 of 269

1.01

0.78

0.0029

(more ...)

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