STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL55971.1Integral membrane protein; Belongs to the BI1 family. (239 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.722
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
       0.627
mutM
Formamidopyrimidine 5-formyluracil 5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.564
coaE
Dephosphocoenzyme A kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.563
nrdR
NrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.560
KRL55965.1
Primosomal protein DnaI.
       0.533
KRL55966.1
Replicative DNA helicase loader DnaB.
       0.533
KRL55974.1
tRNA-binding domain protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.452
KRL55536.1
Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.438
KRL55973.1
Hypothetical protein.
       0.401
Your Current Organism:
Lactobacillus oligofermentans
NCBI taxonomy Id: 1423778
Other names: L. oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans AMKR18, Lactobacillus oligofermentans DSM 15707, Lactobacillus oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans LMG 22743, Lactobacillus oligofermentans LMG 22743 = DSM 15707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.