STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL55301.1ROK family protein. (391 aa)    
Predicted Functional Partners:
KRL55179.1
N-acetylglucosamine PTS, EIICBA.
  
 0.999
KRL55348.1
Phosphotransferase system, mannose fructose-specific component IIA.
    
 0.826
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.786
KRL55722.1
Sugar kinase and transcription regulator.
 
  
  0.776
KRL54772.1
Hypothetical protein.
 
  
  0.728
KRL55932.1
Glucokinase.
 
  
  0.714
xylB
Xylulokinase.
 
  
 0.695
KRL55302.1
Aldose 1-epimerase; Catalyzes the interconversion of alpha and beta anomers of maltose.
    
 0.660
KRL54753.1
HTH domain protein.
 
 
 0.503
KRL54754.1
Kinase, PfkB family.
  
 
 0.437
Your Current Organism:
Lactobacillus oligofermentans
NCBI taxonomy Id: 1423778
Other names: L. oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans AMKR18, Lactobacillus oligofermentans DSM 15707, Lactobacillus oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans LMG 22743, Lactobacillus oligofermentans LMG 22743 = DSM 15707
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