STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL54961.1HNH nuclease. (175 aa)    
Predicted Functional Partners:
KRL54959.1
Phage terminase.
 
  
 0.931
KRL54960.1
Phage terminase, small subunit, P27 family.
 
    0.926
KRL54957.1
Portal protein.
 
  
 0.881
KRL54956.1
Phage capsid protein.
 
     0.862
KRL54952.1
Hypothetical protein.
 
     0.825
KRL54950.1
Major tail protein.
 
     0.824
KRL54951.1
Hypothetical protein.
 
     0.824
KRL54946.1
Tape measure protein.
 
     0.819
KRL54945.1
Hypothetical protein.
 
    0.799
KRL54944.1
Minor structural protein.
 
     0.780
Your Current Organism:
Lactobacillus oligofermentans
NCBI taxonomy Id: 1423778
Other names: L. oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans AMKR18, Lactobacillus oligofermentans DSM 15707, Lactobacillus oligofermentans DSM 15707 = LMG 22743, Lactobacillus oligofermentans LMG 22743, Lactobacillus oligofermentans LMG 22743 = DSM 15707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.