STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL10199.1Hypothetical protein. (104 aa)    
Predicted Functional Partners:
KRL11519.1
Hypothetical protein.
  
     0.628
KRL08948.1
VanZ family protein.
  
     0.555
KRL10904.1
Hypothetical protein.
  
     0.553
KRL12080.1
Hypothetical protein.
  
     0.528
KRL10198.1
Hypothetical protein.
       0.505
KRL09064.1
Hypothetical protein.
  
     0.443
KRL08526.1
Integral membrane sensor signal transduction histidine kinase.
  
     0.424
KRL10478.1
Hypothetical protein.
  
     0.410
KRL10495.1
N-acetyltransferase GCN5.
  
     0.400
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.