STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL10228.1Peptidoglycan-binding lysin domain-containing protein. (198 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.890
KRL09117.1
Cell wall hydrolase autolysin.
    
 0.873
KRL09027.1
CinA domain-containing protein; Belongs to the CinA family.
   
 
  0.868
KRL10162.1
Periplasmic protease.
  
 
 0.823
KRL09777.1
Hypothetical protein.
  
 
   0.629
KRL10275.1
Aggregation promoting factor-like surface protein.
  
 0.595
KRL10384.1
Pentapeptide repeat-containing protein.
    
 
 0.590
KRL10249.1
Peptidase M10A and M12B matrixin and adamalysin.
  
     0.545
KRL12080.1
Hypothetical protein.
  
     0.517
KRL12087.1
Glycosyl hydrolase family 3 protein.
     
 0.490
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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