STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL10300.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
KRL10299.1
Crp Fnr family transcriptional regulator.
       0.752
KRL10220.1
Esterase lipase.
  
     0.646
KRL08988.1
Hypothetical protein.
  
     0.622
KRL11462.1
Hypothetical protein.
  
     0.601
KRL09265.1
dUTPase.
  
     0.576
KRL09266.1
Hypothetical protein.
  
     0.569
KRL09669.1
Hypothetical protein.
  
     0.534
KRL11444.1
Hypothetical protein.
  
     0.512
KRL09785.1
Hypothetical protein.
  
     0.501
KRL10298.1
Carbohydrate kinase.
       0.490
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.