STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL10387.1ABC-2 type transporter. (376 aa)    
Predicted Functional Partners:
KRL10386.1
Fe(3+)-transporting ATPase.
 
 0.989
KRL10388.1
TetR family transcriptional regulator.
     0.986
KRL10306.1
ABC transporter-like protein.
 
 0.796
KRL10305.1
Polyketide antibiotics exporter.
  
  
 0.658
KRL11575.1
ABC transporter, ATP-binding protein.
 
 0.639
KRL09122.1
ABC-2 type transporter.
    
  0.607
KRL09324.1
Phosphonate-transporting ATPase.
 
  0.571
KRL12068.1
ABC transporter.
     
 0.553
KRL10475.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
    0.541
KRL08937.1
Nitroreductase.
  
    0.541
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.