STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL12617.1Protein-tyrosine-phosphatase. (254 aa)    
Predicted Functional Partners:
KRL12616.1
Non-specific protein-tyrosine kinase.
  
 0.998
KRL12615.1
Lipopolysaccharide biosynthesis protein.
 
 
 0.990
KRL12618.1
Undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.942
KRL11819.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.938
KRL12614.1
LytR family transcriptional regulator.
 
  
 0.764
KRL12619.1
Alpha(1,3)galactosyltransferase EpsF.
 
  
 0.585
KRL12622.1
Glycosyltransferase.
 
  
 0.536
KRL12624.1
Hypothetical protein.
 
   
 0.523
KRL12620.1
Hypothetical protein.
 
     0.502
KRL09243.1
Serine threonine protein kinase with PASTA sensor(s).
    
 
 0.478
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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