STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL08914.1Transcriptional regulator. (176 aa)    
Predicted Functional Partners:
KRL12080.1
Hypothetical protein.
  
     0.759
KRL11987.1
Hypothetical protein.
  
     0.700
KRL10249.1
Peptidase M10A and M12B matrixin and adamalysin.
  
     0.656
KRL10907.1
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
  
     0.633
KRL11514.1
Hypothetical protein.
  
     0.595
KRL08920.1
Hypothetical protein.
  
     0.589
KRL09929.1
Hypothetical protein.
  
     0.583
KRL09064.1
Hypothetical protein.
  
     0.581
KRL10181.1
Sigma-70 family RNA polymerase sigma factor.
  
     0.569
KRL09796.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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