STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL09371.1rRNA methylase. (190 aa)    
Predicted Functional Partners:
KRL09370.1
PA-phosphatase-like phosphoesterase.
  
    0.792
KRL08527.1
Glutathione synthase; Belongs to the glutamate--cysteine ligase type 1 family.
   
 
 0.701
KRL09191.1
FAD dependent oxidoreductase.
  
 
 0.694
KRL09299.1
Type 12 methyltransferase.
  
 0.553
KRL11455.1
Acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.539
KRL11856.1
NADH dehydrogenase (ubiquinone).
  
  
 0.534
KRL09255.1
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.532
KRL10432.1
UbiA prenyltransferase.
    
 0.508
KRL09815.1
Cyclopropane-fatty-acyl-phospholipid synthase.
    
 0.506
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.499
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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