STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL12345.1Tail protein. (1858 aa)    
Predicted Functional Partners:
KRL12348.1
Phage minor structural protein.
 
    0.933
KRL12350.1
Hypothetical protein.
 
     0.858
KRL12343.1
Phage major tail protein.
 
     0.831
KRL12341.1
Phage protein, HK97 gp10 family.
 
     0.828
KRL12342.1
Hypothetical protein.
 
     0.828
KRL12337.1
Phage portal protein, HK97 family.
 
     0.809
KRL12339.1
Phage major capsid protein, HK97 family.
 
     0.809
KRL12336.1
Phage terminase, large subunit.
 
     0.800
KRL12335.1
Hypothetical protein.
 
     0.798
KRL12346.1
Phage tail component protein.
  
    0.794
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.