STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL12018.1Yhch yjgk yial family protein. (151 aa)    
Predicted Functional Partners:
KRL12019.1
Major facilitator superfamily protein.
 
     0.926
KRL12013.1
Hypothetical protein.
 
     0.767
KRL12020.1
beta-D-galactosidase.
 
    
0.737
KRL12014.1
L-xylulose 3-keto-L-gulonate kinase.
 
     0.717
KRL10121.1
Beta-galactosidase.
   
  0.699
KRL10122.1
Family 2 glycoside hydrolase.
   
  0.699
KRL09878.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
   
  0.699
KRL12015.1
L-ribulose-5-phosphate 3-epimerase.
 
     0.672
KRL12127.1
Melibiase subfamily protein.
  
  
  0.606
KRL12021.1
Transcriptional regulator.
 
     0.586
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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