STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL12054.1Phosphonate-transporting ATPase. (233 aa)    
Predicted Functional Partners:
KRL10419.1
Permease domain-containing protein.
 
  0.974
KRL10959.1
Fe(3+)-transporting ATPase.
 
    
0.906
KRL12102.1
ABC transporter-like protein.
 
  
 
0.879
KRL10306.1
ABC transporter-like protein.
 
  
 
0.857
KRL11423.1
Hypothetical protein.
  
  0.817
KRL11485.1
Peptide ABC transporter ATPase.
  
 
0.815
KRL10415.1
Hypothetical protein.
   
  0.807
KRL08616.1
Polar amino acid ABC transporter inner membrane subunit.
 
 
 0.763
KRL08902.1
Polar amino acid ABC transporter inner membrane subunit.
 
 
 0.696
KRL11433.1
ABC transporter-like protein.
 
  
 
0.676
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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