STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL12087.1Glycosyl hydrolase family 3 protein. (342 aa)    
Predicted Functional Partners:
KRL08967.1
Beta-lactamase.
 
 0.976
KRL09861.1
Oligo-1,6-glucosidase.
   
 
 0.940
KRL09391.1
Lysozyme.
    
 0.887
KRL09117.1
Cell wall hydrolase autolysin.
    
 0.862
KRL10162.1
Periplasmic protease.
     
 0.829
KRL09389.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.803
KRL11591.1
N-acetylmuramoyl-L-alanine amidase family 2 protein.
    
  0.803
KRL08921.1
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
    
 0.727
KRL12104.1
Hypothetical protein.
    
 0.723
KRL11635.1
Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family.
 
   
  0.688
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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