STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL11538.1Lipoprotein. (293 aa)    
Predicted Functional Partners:
KRL11536.1
Xenobiotic-transporting ATPase.
 
  
 0.681
KRL09837.1
Hypothetical protein.
  
     0.640
KRL10394.1
VanZ family protein.
  
     0.633
KRL09818.1
Hypothetical protein.
  
    0.615
KRL08904.1
Peptidase M10A and M12B matrixin and adamalysin.
  
     0.591
KRL09510.1
Hypothetical protein.
  
     0.576
KRL08931.1
Hypothetical protein.
  
     0.572
KRL11537.1
ABC transporter, ATP-binding protein.
 
    0.571
KRL08996.1
Hypothetical protein.
  
     0.549
KRL08624.1
Hypothetical protein.
  
     0.536
Your Current Organism:
Lactobacillus otakiensis
NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.