KRL11593.1 protein (Lactobacillus otakiensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

KRL11593.1

Hypothetical protein. (184 aa)

Predicted Functional Partners:

KRL11624.1

0.724

KRL11450.1

0.683

KRL09388.1

0.656

KRL09510.1

0.650

KRL11474.1

0.624

KRL12063.1

0.578

KRL09915.1

0.576

KRL09520.1

0.569

KRL09366.1

0.556

KRL11594.1

0.545

Your Current Organism:

Lactobacillus otakiensis

NCBI taxonomy Id: 1423780
Other names: L. otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis DSM 19908, Lactobacillus otakiensis DSM 19908 = JCM 15040, Lactobacillus otakiensis JCM 15040, Lactobacillus otakiensis JCM 15040 = DSM 19908

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRL09366.1	KRL11593.1	FD05_GL001463	FD05_GL002231	Acyltransferase 3.	Hypothetical protein.	0.556
KRL09366.1	KRL11624.1	FD05_GL001463	FD05_GL002262	Acyltransferase 3.	Hypothetical protein.	0.528
KRL09388.1	KRL09510.1	FD05_GL001486	FD05_GL001613	Hypothetical protein.	Hypothetical protein.	0.454
KRL09388.1	KRL11450.1	FD05_GL001486	FD05_GL002083	Hypothetical protein.	Hypothetical protein.	0.559
KRL09388.1	KRL11593.1	FD05_GL001486	FD05_GL002231	Hypothetical protein.	Hypothetical protein.	0.656
KRL09388.1	KRL11624.1	FD05_GL001486	FD05_GL002262	Hypothetical protein.	Hypothetical protein.	0.629
KRL09510.1	KRL09388.1	FD05_GL001613	FD05_GL001486	Hypothetical protein.	Hypothetical protein.	0.454
KRL09510.1	KRL11450.1	FD05_GL001613	FD05_GL002083	Hypothetical protein.	Hypothetical protein.	0.528
KRL09510.1	KRL11593.1	FD05_GL001613	FD05_GL002231	Hypothetical protein.	Hypothetical protein.	0.650
KRL09520.1	KRL11450.1	FD05_GL001624	FD05_GL002083	Phosphohydrolase.	Hypothetical protein.	0.473
KRL09520.1	KRL11593.1	FD05_GL001624	FD05_GL002231	Phosphohydrolase.	Hypothetical protein.	0.569
KRL09915.1	KRL11593.1	FD05_GL000900	FD05_GL002231	Acyltransferase 3.	Hypothetical protein.	0.576
KRL09915.1	KRL11624.1	FD05_GL000900	FD05_GL002262	Acyltransferase 3.	Hypothetical protein.	0.491
KRL11450.1	KRL09388.1	FD05_GL002083	FD05_GL001486	Hypothetical protein.	Hypothetical protein.	0.559
KRL11450.1	KRL09510.1	FD05_GL002083	FD05_GL001613	Hypothetical protein.	Hypothetical protein.	0.528
KRL11450.1	KRL09520.1	FD05_GL002083	FD05_GL001624	Hypothetical protein.	Phosphohydrolase.	0.473
KRL11450.1	KRL11593.1	FD05_GL002083	FD05_GL002231	Hypothetical protein.	Hypothetical protein.	0.683
KRL11450.1	KRL11624.1	FD05_GL002083	FD05_GL002262	Hypothetical protein.	Hypothetical protein.	0.590
KRL11474.1	KRL11593.1	FD05_GL002107	FD05_GL002231	Hypothetical protein.	Hypothetical protein.	0.624
KRL11593.1	KRL09366.1	FD05_GL002231	FD05_GL001463	Hypothetical protein.	Acyltransferase 3.	0.556

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Network Stats

number of nodes:

11

number of edges:

25

average node degree:

4.55

avg. local clustering coefficient:

0.915

expected number of edges:

13

PPI enrichment p-value:

0.00139

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030198

Extracellular matrix organization

3 of 3

2.58

1.93

0.00027

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008658

Penicillin binding

6 of 22

2.02

3.53

1.27e-08

GO:0005201

Extracellular matrix structural constituent

3 of 3

2.58

2.5

2.21e-05

GO:0008955

Peptidoglycan glycosyltransferase activity

2 of 5

2.19

1.08

0.0095

GO:0009002

Serine-type D-Ala-D-Ala carboxypeptidase activity

2 of 9

1.93

0.87

0.0220

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0031012

Extracellular matrix

3 of 3

2.58

2.43

2.96e-05

GO:0005615

Extracellular space

3 of 3

2.58

2.43

2.96e-05

GO:0005887

Integral component of plasma membrane

4 of 78

1.29

1.11

0.0011

GO:0071944

Cell periphery

7 of 655

0.61

0.44

0.0067

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2028

Mixed, incl. Penicillin-binding protein, transpeptidase, and Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal

6 of 12

2.28

4.57

3.03e-10

CL:1996

Peptidoglycan biosynthesis, and Alanine racemase

7 of 29

1.97

4.01

2.39e-10

CL:2030

Penicillin-binding protein, transpeptidase, and Cell cycle, FtsW / RodA / SpoVE, conserved site

4 of 6

2.41

3.28

4.40e-07

CL:1986

Mixed, incl. Peptidoglycan biosynthesis, and Extracellular region

10 of 140

1.44

2.62

2.11e-11

CL:2169

Mixed, incl. Extracellular space, and Xylanase activity

3 of 20

1.76

1.34

0.0017

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00550

Peptidoglycan biosynthesis

6 of 42

1.74

2.79

7.49e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005576

Extracellular region

4 of 98

1.2

0.69

0.0221

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00905

Penicillin binding protein transpeptidase domain

4 of 7

2.34

2.78

4.06e-06

PF03717

Penicillin-binding Protein dimerisation domain

3 of 3

2.58

2.25

6.54e-05

PF01391

Collagen triple helix repeat (20 copies)

2 of 3

2.41

1.08

0.0102

PF00912

Transglycosylase

2 of 4

2.28

1.05

0.0115

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001460

Penicillin-binding protein, transpeptidase

4 of 7

2.34

2.59

1.01e-05

IPR036138

Penicillin-binding protein, dimerisation domain superfamily

3 of 3

2.58

2.14

0.00011

IPR005311

Penicillin-binding protein, dimerisation domain

3 of 3

2.58

2.14

0.00011

IPR012338

Beta-lactamase/transpeptidase-like

4 of 17

1.96

1.97

9.00e-05

IPR008160

Collagen triple helix repeat

2 of 2

2.58

1.12

0.0092

(more ...)

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