STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM67730.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
uvrB
Excision endonuclease subunit UvrB; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dis [...]
  
 
 0.939
KRM67728.1
Type I restriction-modification system.
       0.790
KRM67729.1
Type I site-specific deoxyribonuclease specificity subunit.
       0.790
KRM67727.1
hsdR protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.752
KRM68028.1
Hypothetical protein.
    
 0.669
KRM68684.1
single-stranded-DNA-specific exonuclease RecJ.
     
 0.583
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.580
KRM67731.1
Hypothetical protein.
       0.516
KRM68702.1
CinA domain-containing protein; Belongs to the CinA family.
     
 0.514
KRM67726.1
Hypothetical protein.
       0.504
Your Current Organism:
Lactobacillus ozensis
NCBI taxonomy Id: 1423781
Other names: L. ozensis DSM 23829 = JCM 17196, Lactobacillus ozensis DSM 23829, Lactobacillus ozensis DSM 23829 = JCM 17196, Lactobacillus ozensis JCM 17196, Lactobacillus ozensis JCM 17196 = DSM 23829, Lactobacillus ozensis Mizu2-1, Lactobacillus sp. Mizu2-1
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