KRM28165.1 protein (Lactobacillus panis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRM28165.1

Amino acid ABC superfamily ATP binding cassette transporter, membrane protein. (501 aa)

Predicted Functional Partners:

KRM25063.1

0.991

KRM28299.1

0.989

KRM24950.1

0.984

KRM26702.1

0.983

KRM25832.1

0.975

KRM28298.1

0.892

KRM31207.1

0.864

KRM25062.1

0.864

KRM28820.1

0.770

KRM27448.1

0.735

Your Current Organism:

Lactobacillus panis

NCBI taxonomy Id: 1423782
Other names: L. panis DSM 6035, Lactobacillus panis DSM 6035

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRM24950.1	KRM25062.1	FD32_GL001073	FD32_GL001039	ABC transporter related.	ABC transporter, permease protein.	0.977
KRM24950.1	KRM28165.1	FD32_GL001073	FD32_GL001811	ABC transporter related.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.984
KRM24950.1	KRM28298.1	FD32_GL001073	FD32_GL001728	ABC transporter related.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.989
KRM24950.1	KRM31207.1	FD32_GL001073	FD32_GL000625	ABC transporter related.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.978
KRM25062.1	KRM24950.1	FD32_GL001039	FD32_GL001073	ABC transporter, permease protein.	ABC transporter related.	0.977
KRM25062.1	KRM25063.1	FD32_GL001039	FD32_GL001040	ABC transporter, permease protein.	Arginine abc transporter, atp-binding protein artm.	0.996
KRM25062.1	KRM25832.1	FD32_GL001039	FD32_GL000664	ABC transporter, permease protein.	ABC superfamily ATP binding cassette transporter, ABC protein.	0.960
KRM25062.1	KRM26702.1	FD32_GL001039	FD32_GL000291	ABC transporter, permease protein.	Glutamine ABC transporter, ATP-binding protein GlnQ.	0.971
KRM25062.1	KRM27448.1	FD32_GL001039	FD32_GL000027	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.685
KRM25062.1	KRM28165.1	FD32_GL001039	FD32_GL001811	ABC transporter, permease protein.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.864
KRM25062.1	KRM28298.1	FD32_GL001039	FD32_GL001728	ABC transporter, permease protein.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.892
KRM25062.1	KRM28299.1	FD32_GL001039	FD32_GL001729	ABC transporter, permease protein.	Arginine ABC transporter, ATP-binding protein ArtM.	0.983
KRM25062.1	KRM28820.1	FD32_GL001039	FD32_GL001622	ABC transporter, permease protein.	Oxidoreductase.	0.770
KRM25062.1	KRM31207.1	FD32_GL001039	FD32_GL000625	ABC transporter, permease protein.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.862
KRM25063.1	KRM25062.1	FD32_GL001040	FD32_GL001039	Arginine abc transporter, atp-binding protein artm.	ABC transporter, permease protein.	0.996
KRM25063.1	KRM28165.1	FD32_GL001040	FD32_GL001811	Arginine abc transporter, atp-binding protein artm.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.991
KRM25063.1	KRM28298.1	FD32_GL001040	FD32_GL001728	Arginine abc transporter, atp-binding protein artm.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.992
KRM25063.1	KRM31207.1	FD32_GL001040	FD32_GL000625	Arginine abc transporter, atp-binding protein artm.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.989
KRM25832.1	KRM25062.1	FD32_GL000664	FD32_GL001039	ABC superfamily ATP binding cassette transporter, ABC protein.	ABC transporter, permease protein.	0.960
KRM25832.1	KRM28165.1	FD32_GL000664	FD32_GL001811	ABC superfamily ATP binding cassette transporter, ABC protein.	Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.	0.975