STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN53_04440Putative phage minor capsid protein. (198 aa)    
Predicted Functional Partners:
BN53_04460
Putative uncharacterized protein.
 
     0.854
BN53_04185
Rorf198 protein.
 
    0.799
BN53_03065
Putative phage portal protein.
 
  
 0.798
BN53_03070
Putative phage head protein.
 
     0.786
BN53_04245
Phage-related terminase, large subunit.
 
    0.773
BN53_03055
Putative phage terminase small subunit.
 
    0.755
BN53_03060
Putative phage terminase large subunit B.
 
    0.730
BN53_04235
Minor capsid protein.
 
    0.710
BN53_04240
Minor structural protein gp61.
 
    0.703
BN53_04320
Orf309.
  
     0.553
Your Current Organism:
Lactobacillus pasteurii
NCBI taxonomy Id: 1423790
Other names: L. pasteurii DSM 23907 = CRBIP 24.76, Lactobacillus pasteurii CRBIP 24.76, Lactobacillus pasteurii CRBIP 24.76 = DSM 23907, Lactobacillus pasteurii DSM 23907, Lactobacillus pasteurii DSM 23907 = CRBIP 24.76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.