STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN53_05725Possible diphosphomevalonate decarboxylase. (319 aa)    
Predicted Functional Partners:
BN53_05730
Phosphomevalonate kinase.
 
 
 0.998
BN53_05720
Mevalonate kinase.
 
 
 0.997
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.995
BN53_07705
Possible hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
 
 
 0.972
BN53_06575
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.952
BN53_07700
Possible hydroxymethylglutaryl-CoA synthase.
 
 
 0.931
BN53_04670
Nucleoside diphosphate (Nudix) hydrolase.
  
 
 0.798
BN53_05700
Putative uncharacterized protein.
 
     0.689
dinG
ATP-dependent DNA helicase; 3'-5' exonuclease.
       0.649
lysS
Lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.647
Your Current Organism:
Lactobacillus pasteurii
NCBI taxonomy Id: 1423790
Other names: L. pasteurii DSM 23907 = CRBIP 24.76, Lactobacillus pasteurii CRBIP 24.76, Lactobacillus pasteurii CRBIP 24.76 = DSM 23907, Lactobacillus pasteurii DSM 23907, Lactobacillus pasteurii DSM 23907 = CRBIP 24.76
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.