Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRL08668.1 | rplL | FD09_GL001580 | FD09_GL001611 | Coenzyme A disulfide reductase. | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.447 |
| KRL08668.1 | rplM | FD09_GL001580 | FD09_GL002148 | Coenzyme A disulfide reductase. | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| KRL08668.1 | rpmE2 | FD09_GL001580 | FD09_GL001165 | Coenzyme A disulfide reductase. | rpmE2 protein. | 0.798 |
| KRL08668.1 | rpsD | FD09_GL001580 | FD09_GL001407 | Coenzyme A disulfide reductase. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.733 |
| KRL08668.1 | rpsO | FD09_GL001580 | FD09_GL001336 | Coenzyme A disulfide reductase. | 30s ribosomal protein s15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.800 |
| rplL | KRL08668.1 | FD09_GL001611 | FD09_GL001580 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Coenzyme A disulfide reductase. | 0.447 |
| rplL | rplM | FD09_GL001611 | FD09_GL002148 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplL | rplT | FD09_GL001611 | FD09_GL001478 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplL | rpmE2 | FD09_GL001611 | FD09_GL001165 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | rpmE2 protein. | 0.997 |
| rplL | rpmH | FD09_GL001611 | FD09_GL001555 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL34 family. | 0.995 |
| rplL | rpmI | FD09_GL001611 | FD09_GL001479 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| rplL | rpsD | FD09_GL001611 | FD09_GL001407 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rplL | rpsO | FD09_GL001611 | FD09_GL001336 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 30s ribosomal protein s15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
| rplL | rpsT | FD09_GL001611 | FD09_GL001337 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Hypothetical protein; Binds directly to 16S ribosomal RNA. | 0.998 |
| rplL | tuf | FD09_GL001611 | FD09_GL001332 | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.994 |
| rplM | KRL08668.1 | FD09_GL002148 | FD09_GL001580 | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Coenzyme A disulfide reductase. | 0.999 |
| rplM | rplL | FD09_GL002148 | FD09_GL001611 | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
| rplM | rplT | FD09_GL002148 | FD09_GL001478 | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplM | rpmE2 | FD09_GL002148 | FD09_GL001165 | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | rpmE2 protein. | 0.999 |
| rplM | rpmH | FD09_GL002148 | FD09_GL001555 | rplM protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL34 family. | 0.999 |
page 1 of 5