Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRM35673.1 | KRM36026.1 | FD34_GL000558 | FD34_GL000286 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.828 |
| KRM35673.1 | KRM36027.1 | FD34_GL000558 | FD34_GL000287 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, delta prime subunit. | 0.988 |
| KRM35673.1 | dnaA | FD34_GL000558 | FD34_GL000557 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.998 |
| KRM35673.1 | recR | FD34_GL000558 | FD34_GL000291 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.620 |
| KRM36024.1 | KRM36026.1 | FD34_GL000284 | FD34_GL000286 | Acyl-acp thioesterase. | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.873 |
| KRM36024.1 | KRM36027.1 | FD34_GL000284 | FD34_GL000287 | Acyl-acp thioesterase. | DNA polymerase III, delta prime subunit. | 0.856 |
| KRM36024.1 | KRM36028.1 | FD34_GL000284 | FD34_GL000288 | Acyl-acp thioesterase. | Hypothetical protein. | 0.831 |
| KRM36024.1 | KRM36030.1 | FD34_GL000284 | FD34_GL000290 | Acyl-acp thioesterase. | Hypothetical protein. | 0.753 |
| KRM36024.1 | recR | FD34_GL000284 | FD34_GL000291 | Acyl-acp thioesterase. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.721 |
| KRM36024.1 | rsmI | FD34_GL000284 | FD34_GL000285 | Acyl-acp thioesterase. | uroporphyrin-III C tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.879 |
| KRM36024.1 | tmk | FD34_GL000284 | FD34_GL000289 | Acyl-acp thioesterase. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.831 |
| KRM36026.1 | KRM35673.1 | FD34_GL000286 | FD34_GL000558 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.828 |
| KRM36026.1 | KRM36024.1 | FD34_GL000286 | FD34_GL000284 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Acyl-acp thioesterase. | 0.873 |
| KRM36026.1 | KRM36027.1 | FD34_GL000286 | FD34_GL000287 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | DNA polymerase III, delta prime subunit. | 0.914 |
| KRM36026.1 | KRM36028.1 | FD34_GL000286 | FD34_GL000288 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Hypothetical protein. | 0.839 |
| KRM36026.1 | KRM36030.1 | FD34_GL000286 | FD34_GL000290 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Hypothetical protein. | 0.778 |
| KRM36026.1 | KRM36366.1 | FD34_GL000286 | FD34_GL000069 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Cystathionine beta-synthase (CBS) domain protein. | 0.732 |
| KRM36026.1 | dnaA | FD34_GL000286 | FD34_GL000557 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.781 |
| KRM36026.1 | recR | FD34_GL000286 | FD34_GL000291 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.723 |
| KRM36026.1 | rsmI | FD34_GL000286 | FD34_GL000285 | Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family. | uroporphyrin-III C tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.868 |
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