Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRM35410.1 | KRM35411.1 | FD34_GL000923 | FD34_GL000924 | Patatin. | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | 0.551 |
| KRM35411.1 | KRM35410.1 | FD34_GL000924 | FD34_GL000923 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Patatin. | 0.551 |
| KRM35411.1 | KRM35412.1 | FD34_GL000924 | FD34_GL000925 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Hypothetical protein. | 0.534 |
| KRM35411.1 | KRM37509.1 | FD34_GL000924 | FD34_GL001259 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Excinuclease ABC, A subunit. | 0.541 |
| KRM35411.1 | pgk | FD34_GL000924 | FD34_GL000008 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.506 |
| KRM35411.1 | ruvA | FD34_GL000924 | FD34_GL000087 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.579 |
| KRM35411.1 | ruvB | FD34_GL000924 | FD34_GL000086 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Holliday junction dna helicase ruvb; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.577 |
| KRM35411.1 | topA | FD34_GL000924 | FD34_GL000885 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Dna topoisomerase i; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.525 |
| KRM35411.1 | uvrA | FD34_GL000924 | FD34_GL000237 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Excinuclease abc, a subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.541 |
| KRM35411.1 | uvrB | FD34_GL000924 | FD34_GL000238 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Excision endonuclease subunit UvrB; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dis [...] | 0.568 |
| KRM35411.1 | uvrC | FD34_GL000924 | FD34_GL000783 | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.544 |
| KRM35412.1 | KRM35411.1 | FD34_GL000925 | FD34_GL000924 | Hypothetical protein. | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | 0.534 |
| KRM37509.1 | KRM35411.1 | FD34_GL001259 | FD34_GL000924 | Excinuclease ABC, A subunit. | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | 0.541 |
| KRM37509.1 | ruvA | FD34_GL001259 | FD34_GL000087 | Excinuclease ABC, A subunit. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.645 |
| KRM37509.1 | ruvB | FD34_GL001259 | FD34_GL000086 | Excinuclease ABC, A subunit. | Holliday junction dna helicase ruvb; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.644 |
| KRM37509.1 | topA | FD34_GL001259 | FD34_GL000885 | Excinuclease ABC, A subunit. | Dna topoisomerase i; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.551 |
| KRM37509.1 | uvrA | FD34_GL001259 | FD34_GL000237 | Excinuclease ABC, A subunit. | Excinuclease abc, a subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.945 |
| KRM37509.1 | uvrB | FD34_GL001259 | FD34_GL000238 | Excinuclease ABC, A subunit. | Excision endonuclease subunit UvrB; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dis [...] | 0.996 |
| KRM37509.1 | uvrC | FD34_GL001259 | FD34_GL000783 | Excinuclease ABC, A subunit. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.946 |
| pgk | KRM35411.1 | FD34_GL000008 | FD34_GL000924 | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family. | 0.506 |
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