STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM37138.1RNase III regulator YmdB. (166 aa)    
Predicted Functional Partners:
KRM35528.1
Replication-associated recombination protein A.
      0.825
KRM37139.1
Hypothetical protein.
       0.774
cmk
Cytidylate kinase.
      0.693
KRM37140.1
DNA-binding helix-turn-helix protein.
       0.646
KRM35397.1
Nadh oxidase.
  
 0.608
KRM38123.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.495
KRM36202.1
Tyrosine-phosphatase protein.
 
      0.484
KRM38007.1
Hypothetical protein.
      0.475
KRM36411.1
ATPase, AAA family.
      0.466
KRM37141.1
M13 family peptidase.
       0.437
Your Current Organism:
Lactobacillus pontis
NCBI taxonomy Id: 1423794
Other names: L. pontis DSM 8475, Lactobacillus pontis DSM 8475
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.