STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM36981.1Peptidoglycan-binding protein. (256 aa)    
Predicted Functional Partners:
cinA
Competence-damage protein; Belongs to the CinA family.
    
  0.906
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.899
KRM36357.1
Type II secretion system protein.
 
 
   0.735
KRM36070.1
Hypothetical protein.
 
   0.703
KRM36358.1
Type II IV secretion system protein.
   
   0.676
KRM36061.1
Deoxyuridine 5-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
 
 0.525
KRM35408.1
Hypothetical protein.
  
   0.524
KRM35240.1
NLP P60 protein.
  
 
 0.498
KRM35409.1
Hypothetical protein.
  
  
 0.497
KRM37154.1
N-acetylmuramoyl-L-alanine amidase.
 
  
0.487
Your Current Organism:
Lactobacillus pontis
NCBI taxonomy Id: 1423794
Other names: L. pontis DSM 8475, Lactobacillus pontis DSM 8475
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