STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malLAlpha amylase, catalytic domain protein. (556 aa)    
Predicted Functional Partners:
gtfA
Sucrose phosphorylase.
 
 
  0.957
melA
Alpha-galactosidase.
  
 
 0.778
scrK
Fructokinase.
   
 
 0.737
KRL16295.1
Transporter, major facilitator family protein.
  
    0.716
scrR
LacI family transcriptional regulator.
  
 
 0.595
potE
Amino acid permease.
    
  0.578
KRL18093.1
Amino acid permease.
    
  0.578
KRL14955.1
Hypothetical protein.
    
  0.578
KRL17947.1
Amino acid permease.
    
  0.578
KRL17904.1
Amino acid permease-associated protein.
    
  0.578
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.