STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgmB2Beta-phosphoglucomutase. (227 aa)    
Predicted Functional Partners:
mapA
Glycosyl hydrolase family 65 central catalytic domain protein.
 
 0.996
KRL16831.1
Glycosyl hydrolase family 65 central catalytic domain protein.
 
 0.992
KRL18526.1
Glycosyl hydrolase family 65 central catalytic domain protein.
 
 0.992
KRL15724.1
Glycosyl hydrolase family 65 central catalytic domain protein.
 
 0.986
guaA_1
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.861
pgmB1
Beta-phosphoglucomutase.
  
  
 
0.843
KRL16061.1
Competence damage-inducible protein CinA domain protein; Belongs to the CinA family.
    
  0.819
KRL17540.1
PRD domain protein.
    
  0.672
pucG
Serine--pyruvate transaminase.
    
 0.485
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.442
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.