STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL13999.1Glycosyl hydrolase family 25. (378 aa)    
Predicted Functional Partners:
livC
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
   0.708
KRL16220.1
Hypothetical protein.
  
     0.692
KRL17500.1
Hypothetical protein.
  
     0.648
KRL15078.1
Hypothetical protein.
  
     0.636
KRL18936.1
Hypothetical protein.
  
    0.634
KRL13997.1
AraC family transcriptional regulator.
 
     0.597
KRL13223.1
S-layer protein.
  
     0.566
KRL13998.1
Hypothetical protein.
       0.565
KRL18937.1
KxYKxGKxW signal domain protein.
   
    0.511
KRL17490.1
Beta-lactamase.
  
 
  0.489
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.