STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL17786.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
KRL17785.1
ADP-ribosylglycohydrolase.
       0.608
rnj_2
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
    0.608
KRL17788.1
Hypothetical protein; Belongs to the UPF0356 family.
       0.603
KRL15245.1
Hypothetical protein.
  
 
 
0.558
KRL17584.1
Hypothetical protein.
  
 
 
0.558
plsC
Acyltransferase.
  
  
  0.545
cdsA
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
    
 0.488
dgkA2
Hypothetical protein.
     
 0.483
KRL17903.1
Endonuclease exonuclease phosphatase family protein.
  
 
  0.463
KRL17789.1
Hypothetical protein.
 
     0.462
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.