STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL17275.1ABC transporter, solute-binding protein. (413 aa)    
Predicted Functional Partners:
KRL17277.1
ABC transporter, permease protein.
 
 0.997
KRL17276.1
ABC transporter, permease protein.
 
 0.996
ugpA
ABC transporter, permease protein.
 
 0.992
KRL17278.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.991
ugpC
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.987
ugpE
ABC transporter, permease protein.
 
 0.985
KRL17279.1
Ser Thr phosphatase family protein.
 
     0.917
KRL17280.1
Hypothetical protein.
       0.467
KRL17407.1
PTS system fructose IIA component.
  
  
 0.417
birA2
biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.410
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.