STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL18545.1Hypothetical protein. (264 aa)    
Predicted Functional Partners:
KRL18544.1
ABC transporter, ATP-binding protein.
 
    0.957
KRL18543.1
Transcriptional regulator, GntR family.
 
     0.906
KRL18658.1
Hypothetical protein.
  
     0.644
KRL13628.1
Hypothetical protein.
  
     0.569
KRL15720.1
Hypothetical protein.
  
     0.528
KRL18805.1
Matrixin.
  
     0.513
KRL18542.1
Hypothetical protein.
       0.496
KRL16747.1
Phage DNA packaging protein.
 
     0.492
KRL18095.1
Hypothetical protein.
  
     0.461
KRL17408.1
Hypothetical protein.
  
     0.454
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.