STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduD2Oxidoreductase, short chain dehydrogenase reductase family protein. (247 aa)    
Predicted Functional Partners:
KRL17316.1
Glutamate synthase (NADPH).
     
 0.888
KRL14030.1
Oxidoreductase, short chain dehydrogenase reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.817
KRL14016.1
Oxidoreductase, short chain dehydrogenase reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.672
fabD
S-malonyltransferase.
 
 
  0.631
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  0.630
fabF
3-oxoacyl-ACP synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  0.619
KRL15009.1
Homocysteine S-methyltransferase.
   
 
  0.618
ppiB
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
   0.593
KRL18650.1
Glyoxalase family protein.
  
 
 0.582
KRL16258.1
Hypothetical protein.
   
   0.574
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.