STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM99399.1Lipoprotein precursor. (380 aa)    
Predicted Functional Partners:
ligA
NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
  
  
 0.920
KRM99401.1
ATP-dependent DNA helicase PcrA.
  
  
 0.915
KRM98902.1
Hypothetical protein.
  
     0.750
KRM92849.1
Hypothetical protein.
  
     0.745
KRM95719.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.728
KRM95714.1
Hypothetical protein.
  
     0.712
KRM99255.1
Rod shape-determining protein MreC.
  
    0.687
KRM94674.1
Nucleotide-binding phosphoesterase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
     0.671
KRM98442.1
Hypothetical protein.
  
     0.657
KRN00133.1
Hypothetical protein.
  
     0.642
Your Current Organism:
Lactobacillus rennini
NCBI taxonomy Id: 1423796
Other names: L. rennini DSM 20253, Lactobacillus rennini DSM 20253
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.