STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM99781.1Hypothetical protein. (441 aa)    
Predicted Functional Partners:
KRM99782.1
Hypothetical protein.
     0.948
KRM99783.1
Hypothetical protein.
 
     0.914
KRM99959.1
Hypothetical protein.
 
 0.877
KRM99784.1
Hypothetical protein.
 
     0.861
KRM94138.1
Hypothetical protein.
 
 0.836
KRM99961.1
Hypothetical protein.
     0.782
KRM99962.1
Hypothetical protein.
 
     0.681
KRM97635.1
Pyruvate flavodoxin ferredoxin oxidoreductase family protein.
  
  
 0.580
KRM94136.1
iron(III) ABC transporter ATP-binding component.
 
     0.578
KRM97697.1
Hypothetical protein.
  
   
 0.514
Your Current Organism:
Lactobacillus rennini
NCBI taxonomy Id: 1423796
Other names: L. rennini DSM 20253, Lactobacillus rennini DSM 20253
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