STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL99692.1Hypothetical protein; Belongs to the UPF0342 family. (114 aa)    
Predicted Functional Partners:
KRL99693.1
Multimodular transpeptidase-transglycosylase PBP 2A.
       0.710
KRL98072.1
Hypothetical protein.
  
    0.688
KRL97494.1
Membrane ancor connecting MutS2 with cell-division Z-ring.
  
     0.676
KRM00547.1
Adenine-specific DNA methylase.
  
     0.653
KRL99717.1
Competence protein transcription factor.
  
     0.647
KRL99690.1
DNA repair ATPase.
       0.636
KRL99691.1
DNA repair exonuclease.
       0.636
KRL99689.1
CMP-binding factor.
  
    0.626
KRL99821.1
Protein ecsB.
  
   
 0.571
KRM00219.1
CAAX family protease.
  
    0.547
Your Current Organism:
Lactobacillus satsumensis
NCBI taxonomy Id: 1423801
Other names: L. satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis DSM 16230, Lactobacillus satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis JCM 12392, Lactobacillus satsumensis JCM 12392 = DSM 16230
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