STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM00540.1Intergral membrane protein. (211 aa)    
Predicted Functional Partners:
KRM00541.1
N-acetylglucosamine catabolic protein; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
  
    0.917
KRM00542.1
Hypothetical protein.
  
    0.842
KRM00543.1
Metallophosphoesterase; Belongs to the 5'-nucleotidase family.
       0.770
KRM00544.1
Hypothetical protein.
       0.735
KRM00089.1
ComX; Belongs to the sigma-70 factor family.
 
     0.663
KRM00055.1
Hypothetical protein.
  
     0.619
KRL99933.1
Hypothetical protein.
  
     0.591
KRL98975.1
Two component system histidine kinase.
  
    0.548
KRM00226.1
Acyl-acyl carrier protein thioesterase.
 
     0.531
KRL99107.1
Hypothetical protein.
  
     0.522
Your Current Organism:
Lactobacillus satsumensis
NCBI taxonomy Id: 1423801
Other names: L. satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis DSM 16230, Lactobacillus satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis JCM 12392, Lactobacillus satsumensis JCM 12392 = DSM 16230
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.