STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL98006.1N-6 adenine-specific DNA methylase YitW. (107 aa)    
Predicted Functional Partners:
KRL97361.1
Hypothetical protein.
 
    0.873
KRL97364.1
ABC transporter ATP-binding protein.
 
  
 0.822
KRL97363.1
SufD protein.
 
   
 0.775
KRL98005.1
S9 family serine peptidase.
       0.756
KRL98008.1
23S rRNA m(5)C methyltransferase.
       0.701
KRL97360.1
ABC transporter-associated protein.
 
   
 0.682
KRL98007.1
Hypothetical protein.
       0.662
KRL97362.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.635
KRL96836.1
Hypothetical protein.
  
 
 0.634
KRL99829.1
Dehydrogenase.
  
  
 0.607
Your Current Organism:
Lactobacillus satsumensis
NCBI taxonomy Id: 1423801
Other names: L. satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis DSM 16230, Lactobacillus satsumensis DSM 16230 = JCM 12392, Lactobacillus satsumensis JCM 12392, Lactobacillus satsumensis JCM 12392 = DSM 16230
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.