STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM94472.1XRE family transcriptional regulator. (141 aa)    
Predicted Functional Partners:
KRM94471.1
Hypothetical protein.
 
     0.860
KRM93213.1
Hypothetical protein.
  
     0.772
KRM93911.1
Hypothetical protein.
  
     0.757
KRM93910.1
Hypothetical protein.
  
     0.756
KRM93909.1
dUTPase.
  
     0.743
KRM93767.1
Hypothetical protein.
  
     0.742
KRM93350.1
Glycosyltransferase.
  
     0.741
KRM93202.1
Hypothetical protein.
  
    0.719
KRM93854.1
Hypothetical protein.
  
 
 
 0.711
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.650
Your Current Organism:
Lactobacillus senioris
NCBI taxonomy Id: 1423802
Other names: L. senioris DSM 24302 = JCM 17472, Lactobacillus senioris DSM 24302, Lactobacillus senioris DSM 24302 = JCM 17472, Lactobacillus senioris JCM 17472, Lactobacillus senioris JCM 17472 = DSM 24302, Lactobacillus senioris YIT 12364, Lactobacillus sp. YIT 12364
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.