STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN01444.1Prophage Lp3 protein 8, helicase. (420 aa)    
Predicted Functional Partners:
KRN01443.1
Prophage Lp3 protein 7.
 
     0.951
KRN01441.1
Phage NTP-binding protein.
 
     0.896
KRN01440.1
Helicase-like protein Type III restriction enzyme, res subunit DEAD DEAH box helicase-like protein.
 
     0.891
KRN01261.1
Hypothetical protein.
 
     0.785
KRN01459.1
Hypothetical protein.
  
     0.558
KRN01442.1
Hypothetical protein.
       0.557
KRN01438.1
Hypothetical protein.
       0.505
KRN01439.1
Hypothetical protein.
       0.505
KRN01449.1
Putative terminase, large subunit.
 
     0.481
KRN01212.1
Prophage protein.
 
     0.456
Your Current Organism:
Lactobacillus senmaizukei
NCBI taxonomy Id: 1423803
Other names: L. senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei DSM 21775, Lactobacillus senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei L13, Lactobacillus senmaizukei NBRC 103853, Lactobacillus senmaizukei NBRC 103853 = DSM 21775
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.