STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN01409.1XRE family transcriptional regulator. (139 aa)    
Predicted Functional Partners:
KRN01408.1
SAM-dependent methyltransferase.
 
     0.797
KRN01705.1
Hypothetical protein.
  
     0.761
KRN01706.1
Hypothetical protein.
  
     0.755
KRN01704.1
dUTPase.
  
     0.740
KRN02719.1
Glycosyltransferase.
  
     0.730
KRN02613.1
Hypothetical protein.
  
     0.722
KRN01782.1
Glycosyltransferase.
  
     0.716
KRN02844.1
TPR repeat-containing protein.
  
  
  0.715
KRN02213.1
Pore-forming protein.
  
     0.710
KRN03310.1
Hypothetical protein.
  
     0.702
Your Current Organism:
Lactobacillus senmaizukei
NCBI taxonomy Id: 1423803
Other names: L. senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei DSM 21775, Lactobacillus senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei L13, Lactobacillus senmaizukei NBRC 103853, Lactobacillus senmaizukei NBRC 103853 = DSM 21775
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.