STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN02230.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
KRN02227.1
Primosome component related protein.
 
     0.848
dinG
Rad3-related DNA helicase; 3'-5' exonuclease.
 
    0.818
asnS
asparaginyl-tRNA synthetase.
       0.794
KRN02229.1
Aspartate tyrosine aromatic aminotransferase.
  
    0.789
KRN02563.1
Hypothetical protein.
  
     0.664
KRN02556.1
TPR repeat-containing protein.
 
     0.645
KRN02095.1
Dithiol-disulfide isomerase.
  
     0.626
KRN02663.1
Hypothetical protein.
  
     0.626
KRN01716.1
Cell division protein FtsI.
  
     0.596
KRN02546.1
Hypothetical protein; Belongs to the UPF0346 family.
  
    0.596
Your Current Organism:
Lactobacillus senmaizukei
NCBI taxonomy Id: 1423803
Other names: L. senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei DSM 21775, Lactobacillus senmaizukei DSM 21775 = NBRC 103853, Lactobacillus senmaizukei L13, Lactobacillus senmaizukei NBRC 103853, Lactobacillus senmaizukei NBRC 103853 = DSM 21775
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