STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN24934.1Membrane protein. (347 aa)    
Predicted Functional Partners:
KRN24933.1
Beta-lactamase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.714
KRN24932.1
Hypothetical protein.
 
     0.657
KRN17592.1
Hypothetical protein.
  
     0.590
KRN20018.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.519
KRN18457.1
Glycosyl glycerophosphate transferase.
  
     0.494
KRN26289.1
Transcriptional regulator.
  
     0.484
KRN26484.1
Extracellular protein.
  
     0.457
KRN20323.1
Muramidase (flagellum-specific).
  
     0.436
KRN18524.1
Hypothetical protein.
  
     0.431
KRN15596.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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