STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN23846.1Hypothetical protein. (464 aa)    
Predicted Functional Partners:
KRN23845.1
Hypothetical protein.
      0.955
KRN23833.1
Signal transduction diguanylate cyclase.
  
     0.754
KRN23844.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
 
     0.714
KRN23842.1
Glycosyltransferase.
 
    0.603
KRN25521.1
Hypothetical protein.
  
     0.587
KRN17594.1
Transporter LysE family protein.
  
     0.584
KRN23843.1
Hypothetical protein.
 
     0.582
KRN18217.1
Hypothetical protein.
  
     0.577
KRN25033.1
C-di-GMP-specific phosphodiesterase.
  
     0.572
KRN21708.1
Hypothetical protein.
  
     0.561
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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