STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN21367.1ABC transporter, substrate-binding protein, family 5. (554 aa)    
Predicted Functional Partners:
KRN26623.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.933
KRN26622.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.919
KRN26621.1
ABC-type dipeptide oligopeptide nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.909
KRN26620.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.896
KRN21740.1
Putative pheromone binding protein.
  
  
 
0.737
KRN21734.1
ABC transporter, substrate-binding protein, family 5.
  
  
 
0.518
KRN21211.1
Lipoprotein, peptide binding protein oppa like protein.
  
  
 
0.459
KRN24941.1
Oligopeptide ABC superfamily ATP binding cassette transporter substrate binding protein.
  
  
 
0.448
KRN19983.1
Lipoprotein precursor, peptide binding protein OppA-like protein.
  
  
 
0.435
KRN21742.1
ABC-type oligopeptide transport system, periplasmic component.
  
  
 
0.408
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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