STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN26515.1C-di-GMP-specific phosphodiesterase. (220 aa)    
Predicted Functional Partners:
KRN26591.1
Signal transduction diguanylate cyclase.
 
 0.870
KRN17604.1
Hypothetical protein.
 
 0.856
KRN21743.1
Hypothetical protein.
  
    0.764
KRN21705.1
Signal transduction diguanylate cyclase.
  
    0.757
KRN26960.1
Signal transduction diguanylate cyclase.
  
    0.756
KRN21744.1
Hypothetical protein.
  
    0.753
KRN21351.1
Signal transduction diguanylate cyclase.
  
    0.743
KRN21562.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
  
    0.738
KRN21532.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
  
    0.737
KRN19952.1
Hypothetical protein.
  
    0.735
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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