STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN18523.1PurR family transcriptional regulator. (340 aa)    
Predicted Functional Partners:
KRN26382.1
Glutamate synthase (NADPH).
    
 
 0.856
KRN26061.1
Galactose operon repressor GalR.
  
     0.764
KRN19928.1
LacI family transcription regulator.
  
     0.760
KRN18448.1
Hypothetical protein.
    
 
 0.649
KRN18520.1
Sugar phosphate isomerase epimerase.
 
    0.585
KRN18557.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.577
KRN19325.1
2-dehydro-3-deoxygluconokinase.
 
 
  0.536
KRN18521.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
   0.520
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
   0.507
KRN26135.1
Hypothetical protein.
    
   0.506
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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