STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN17789.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
KRN17788.1
DNA replication protein.
 
  
 0.945
KRN17792.1
Erf family protein.
 
    0.927
KRN17790.1
Hypothetical protein.
 
     0.906
KRN17791.1
Single-stranded DNA binding protein (Ssb).
       0.754
KRN17793.1
Hypothetical protein.
       0.636
KRN20636.1
Hypothetical protein.
 
     0.513
KRN20649.1
SPP1 Gp6 family phage portal protein.
  
    0.478
KRN17794.1
Hypothetical protein.
       0.449
KRN20622.1
Phage-related antirepressor.
  
     0.442
KRN20653.1
Hypothetical protein.
  
     0.440
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.