STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN15998.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
KRN15997.1
Short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.816
KRN15507.1
Hypothetical protein.
  
     0.695
KRN25437.1
Hypothetical protein.
  
     0.657
KRN19306.1
Amino acid transporter.
  
     0.534
KRN20653.1
Hypothetical protein.
  
     0.516
KRN15996.1
Hypothetical protein.
    
  0.506
KRN24973.1
Cell surface protein precursor.
  
     0.491
KRN25675.1
Hypothetical protein.
  
     0.456
KRN27051.1
Hypothetical protein.
  
     0.419
KRN21261.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Lactobacillus similis
NCBI taxonomy Id: 1423804
Other names: L. similis DSM 23365 = JCM 2765, Lactobacillus similis DSM 23365, Lactobacillus similis DSM 23365 = JCM 2765, Lactobacillus similis JCM 2765, Lactobacillus similis JCM 2765 = DSM 23365, Lactobacillus sp. JCM 2765
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.